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1

Diffusive flux in a model of stochastically gated oxygen transport in insect respiration

Berezhkovskii, Alexander M., Shvartsman, Stanislav Y.

Journal:

The Journal of Chemical Physics

Year:

2016

Language:

english

File:

PDF, 404 KB

english, 2016

2

A Computational Framework for 3D Mechanical Modeling of Plant Morphogenesis with Cellular Resolution

Boudon, Frédéric, Chopard, Jérôme, Ali, Olivier, Gilles, Benjamin, Hamant, Olivier, Boudaoud, Arezki, Traas, Jan, Godin, Christophe, Shvartsman, Stanislav

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 1.28 MB

english, 2015

3

Nonlinear model reduction for control of distributed systems: A computer-assisted study

Stanislav Y. Shvartsman, Ioannis G. Kevrekidis

Journal:

Year:

1998

Language:

english

File:

PDF, 1.76 MB

english, 1998

4

Nuclear Trapping Shapes the Terminal Gradient in the Drosophila Embryo

Mathieu Coppey, Alistair N. Boettiger, Alexander M. Berezhkovskii, Stanislav Y. Shvartsman

Journal:

Current Biology

Year:

2008

Language:

english

File:

PDF, 943 KB

english, 2008

5

ERK as a Model for Systems Biology of Enzyme Kinetics in Cells

Futran, Alan S., Link, A. James, Seger, Rony, Shvartsman, Stanislav Y.

Journal:

Current Biology

Year:

2013

Language:

english

File:

PDF, 1.39 MB

english, 2013

6

Localization of Protein Aggregation in Escherichia coli Is Governed by Diffusion and Nucleoid Macromolecular Crowding Effect

Coquel, Anne-Sophie, Jacob, Jean-Pascal, Primet, Mael, Demarez, Alice, Dimiccoli, Mariella, Julou, Thomas, Moisan, Lionel, Lindner, Ariel B., Berry, Hugues, Shvartsman, Stanislav

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 991 KB

english, 2013

7

Bistability and Oscillations in the Huang-Ferrell Model of MAPK Signaling

Qiao, Liang, Nachbar, Robert B., Kevrekidis, Ioannis G., Shvartsman, Stanislav Y.

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 376 KB

english, 2007

8

Nuclear (Bio)physics in the Embryo

Shvartsman, Stanislav Y., Krajnc, Matej

Journal:

Year:

2019

Language:

english

File:

PDF, 904 KB

english, 2019

9

Quantitative Analysis of Developing Tissues

Stanislav Y. Shvartsman

Journal:

Year:

2005

Language:

english

File:

PDF, 273 KB

english, 2005

10

Spatiotemporal patterns in catalytic reactors

Moshe Sheintuch, Stanislav Shvartsman

Journal:

Year:

1996

Language:

english

File:

PDF, 4.58 MB

english, 1996

11

Transitions in the model of epithelial patterning

Michal Přibyl, Cyrill B. Muratov, Stanislav Y. Shvartsman

Journal:

Developmental Dynamics

Year:

2003

Language:

english

File:

PDF, 318 KB

english, 2003

12

Quantitative analysis of the GAL4/UAS system in Drosophila oogenesis

Lea A. Goentoro, Nir Yakoby, Joseph Goodhouse, Trudi Schüpbach, Stanislav Y. Shvartsman

Journal:

Year:

2006

Language:

english

File:

PDF, 876 KB

english, 2006

13

Patterns due to convection—diffusion—reaction interaction in a fixed-bed catalytic reactor

Moshe Sheintuch, Stanislav Shvartsman

Journal:

Chemical Engineering Science

Year:

1994

Language:

english

File:

PDF, 1.33 MB

english, 1994

14

Ligand trapping in epithelial layers and cell cultures

Alexander M. Berezhkovskii, Lazaros Batsilas, Stanislav Y. Shvartsman

Journal:

Biophysical Chemistry

Year:

2004

Language:

english

File:

PDF, 215 KB

english, 2004

15

Chemical Reactor Analysis and Design Fundamentals: Jim Rawlings and John Ekerdt; Nob Hill Publishing, Madison, WI, 2002. ISBN 0-615-11884-4

Ioannis G. Kevrekidis, Stanislav Y. Shvartsman

Journal:

Chemical Engineering Science

Year:

2004

Language:

english

File:

PDF, 133 KB

english, 2004

16

An asymptotic study of the inductive pattern formation mechanism in Drosophila egg development

Cyrill B. Muratov, Stanislav Y. Shvartsman

Journal:

Physica D: Nonlinear Phenomena

Year:

2003

Language:

english

File:

PDF, 301 KB

english, 2003

17

One- and two-dimensional spatiotemporal thermal patterns in a fixed-bed reactor

Stanislav Shvartsman, Moshe Sheintuch

Journal:

Chemical Engineering Science

Year:

1995

Language:

english

File:

PDF, 1.45 MB

english, 1995

18

β-arrestin Kurtz inhibits MAPK and Toll signalling in Drosophila development

Tipping, Marla, Kim, Yoosik, Kyriakakis, Phillip, Tong, Mei, Shvartsman, Stanislav Y, Veraksa, Alexey

Journal:

The EMBO Journal

Year:

2010

Language:

english

File:

PDF, 1.76 MB

english, 2010

19

Argos inhibits epidermal growth factor receptor signalling by ligand sequestration

Klein, Daryl E., Nappi, Valerie M., Reeves, Gregory T., Shvartsman, Stanislav Y., Lemmon, Mark A.

Journal:

Year:

2004

Language:

english

File:

PDF, 353 KB

english, 2004

20

A microfluidic array for large-scale ordering and orientation of embryos

Chung, Kwanghun, Kim, Yoosik, Kanodia, Jitendra S, Gong, Emily, Shvartsman, Stanislav Y, Lu, Hang

Journal:

Year:

2010

Language:

english

File:

PDF, 2.80 MB

english, 2010

21

Mathematical models of morphogen gradients and their effects on gene expression

Stanislav Y. Shvartsman, Ruth E. Baker

Journal:

Wiley Interdisciplinary Reviews: Developmental Biology

Year:

2012

Language:

english

File:

PDF, 901 KB

english, 2012

22

Enhancer Organization: Transistor with a Twist or Something in a Different Vein?

Jeremiah J. Zartman, Stanislav Y. Shvartsman

Journal:

Current Biology

Year:

2007

Language:

english

File:

PDF, 132 KB

english, 2007

23

MAPK Substrate Competition Integrates Patterning Signals in the Drosophila Embryo

Yoosik Kim, Mathieu Coppey, Rona Grossman, Leiore Ajuria, Gerardo Jiménez, Ze'ev Paroush, Stanislav Y. Shvartsman

Journal:

Current Biology

Year:

2010

Language:

english

File:

PDF, 694 KB

english, 2010

24

Expression patterns of cadherin genes in Drosophila oogenesis

Jeremiah J. Zartman, Jitendra S. Kanodia, Nir Yakoby, Xenia Schafer, Colin Watson, Karin Schlichting, Christian Dahmann, Stanislav Y. Shvartsman

Journal:

Gene Expression Patterns

Year:

2009

Language:

english

File:

PDF, 459 KB

english, 2009

25

Why model?

Stanislav Shvartsman

Journal:

Trends in Genetics

Year:

2001

Language:

english

File:

PDF, 28 KB

english, 2001

26

Computational modeling of the EGF-receptor system: a paradigm for systems biology

H Steven Wiley, Stanislav Y Shvartsman, Douglas A Lauffenburger

Journal:

Trends in Cell Biology

Year:

2003

Language:

english

File:

PDF, 176 KB

english, 2003

27

Quantitative Models of Developmental Pattern Formation

Gregory T. Reeves, Cyrill B. Muratov, Trudi Schüpbach, Stanislav Y. Shvartsman

Journal:

Developmental Cell

Year:

2006

Language:

english

File:

PDF, 773 KB

english, 2006

28

Quantifying the Gurken Morphogen Gradient in Drosophila Oogenesis

Lea A. Goentoro, Gregory T. Reeves, Craig P. Kowal, Luigi Martinelli, Trudi Schüpbach, Stanislav Y. Shvartsman

Journal:

Developmental Cell

Year:

2006

Language:

english

File:

PDF, 509 KB

english, 2006

29

A Combinatorial Code for Pattern Formation in Drosophila Oogenesis

Nir Yakoby, Christopher A. Bristow, Danielle Gong, Xenia Schafer, Jessica Lembong, Jeremiah J. Zartman, Marc S. Halfon, Trudi Schüpbach, Stanislav Y. Shvartsman

Journal:

Developmental Cell

Year:

2008

Language:

english

File:

PDF, 1.03 MB

english, 2008

30

Gene Regulation by MAPK Substrate Competition

Yoosik Kim, María José Andreu, Bomyi Lim, Kwanghun Chung, Mark Terayama, Gerardo Jiménez, Celeste A. Berg, Hang Lu, Stanislav Y. Shvartsman

Journal:

Developmental Cell

Year:

2011

Language:

english

File:

PDF, 1.03 MB

english, 2011

31

Dynamics of maternal morphogen gradients in Drosophila

Stanislav Y Shvartsman, Mathieu Coppey, Alexander M Berezhkovskii

Journal:

Current Opinion in Genetics & Development

Year:

2008

Language:

english

File:

PDF, 1.31 MB

english, 2008

32

Pattern formation by receptor tyrosine kinases: analysis of the Gurken gradient in Drosophila oogenesis

Lily S Cheung, Trudi Schüpbach, Stanislav Y Shvartsman

Journal:

Current Opinion in Genetics & Development

Year:

2011

Language:

english

File:

PDF, 887 KB

english, 2011

33

Computational analysis of EGFR inhibition by Argos

Gregory T. Reeves, Rachel Kalifa, Daryl E. Klein, Mark A. Lemmon, Stanislav Y. Shvartsman

Journal:

Developmental Biology

Year:

2005

Language:

english

File:

PDF, 580 KB

english, 2005

34

Modeling the bicoid gradient: Diffusion and reversible nuclear trapping of a stable protein

Mathieu Coppey, Alexander M. Berezhkovskii, Yoosik Kim, Alistair N. Boettiger, Stanislav Y. Shvartsman

Journal:

Developmental Biology

Year:

2007

Language:

english

File:

PDF, 857 KB

english, 2007

35

Corrigendum to “Modeling the bicoid gradient: Diffusion and reversible nuclear trapping of a stable protein” [Dev. Biol. 312 (2007) 623–630]

Mathieu Coppey, Alexander M. Berezhkovskii, Yoosik Kim, Alistair N. Boettiger, Stanislav Y. Shvartsman

Journal:

Developmental Biology

Year:

2008

Language:

english

File:

PDF, 81 KB

english, 2008

36

Cad74A is regulated by BR and is required for robust dorsal appendage formation in Drosophila oogenesis

Jeremiah J. Zartman, Nir Yakoby, Christopher A. Bristow, Xiaofeng Zhou, Karin Schlichting, Christian Dahmann, Stanislav Y. Shvartsman

Journal:

Developmental Biology

Year:

2008

Language:

english

File:

PDF, 1.04 MB

english, 2008

37

The signaling properties in MAPK cycle are modulated by its downstream substrates

Tsuyoshi Hirashima, Yoosik Kim, Stanislav Y. Shvartsman

Journal:

Developmental Biology

Year:

2010

Language:

english

File:

PDF, 132 KB

english, 2010

38

A compartmental model for the bicoid gradient

Michail E. Kavousanakis, Jitendra S. Kanodia, Yoosik Kim, Ioannis G. Kevrekidis, Stanislav Y. Shvartsman

Journal:

Developmental Biology

Year:

2010

Language:

english

File:

PDF, 671 KB

english, 2010

39

Spatial Range of Autocrine Signaling: Modeling and Computational Analysis

Shvartsman, Stanislav Y., Wiley, H. Steven, Deen, William M., Lauffenburger, Douglas A.

Journal:

Biophysical Journal

Year:

2001

Language:

english

File:

PDF, 299 KB

english, 2001

40

Stochastic Model of Autocrine and Paracrine Signals in Cell Culture Assays

Batsilas, Lazaros, Berezhkovskii, Alexander M., Shvartsman, Stanislav Y.

Journal:

Biophysical Journal

Year:

2003

Language:

english

File:

PDF, 256 KB

english, 2003

41

Long-Range Signal Transmission in Autocrine Relays

Přibyl, Michal, Muratov, Cyrill B., Shvartsman, Stanislav Y.

Journal:

Biophysical Journal

Year:

2003

Language:

english

File:

PDF, 383 KB

english, 2003

42

Discrete Models of Autocrine Cell Communication in Epithelial Layers

Přibyl, Michal, Muratov, Cyrill B., Shvartsman, Stanislav Y.

Journal:

Biophysical Journal

Year:

2003

Language:

english

File:

PDF, 370 KB

english, 2003

43

How Long Does It Take to Establish a Morphogen Gradient?

Berezhkovskii, Alexander M., Sample, Christine, Shvartsman, Stanislav Y.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 87 KB

english, 2010

44

Correction

Berezhkovskii, Alexander M., Sample, Christine, Shvartsman, Stanislav Y.

Journal:

Biophysical Journal

Year:

2010

File:

PDF, 22 KB

2010

45

Signaling Gradients in Embryos'

Shvartsman, Stanislav

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 33 KB

english, 2011

46

Substrate-Dependent Control of ERK Phosphorylation Can Lead to Oscillations

Liu, Ping, Kevrekidis, Ioannis G., Shvartsman, Stanislav Y.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 632 KB

english, 2011

47

Pattern Formation by Graded and Uniform Signals in the Early Drosophila Embryo

Kanodia, Jitendra S., Liang, Hsiao-Lan, Kim, Yoosik, Lim, Bomyi, Zhan, Mei, Lu, Hang, Rushlow, Christine A., Shvartsman, Stanislav Y.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 667 KB

english, 2012

48

Ligand Accumulation in Autocrine Cell Cultures

Monine, Michael I., Berezhkovskii, Alexander M., Joslin, Elizabeth J., Wiley, H. Steven, Lauffenburger, Douglas A., Shvartsman, Stanislav Y.

Journal:

Biophysical Journal

Year:

2005

Language:

english

File:

PDF, 197 KB

english, 2005

49

Time and Length Scales of Autocrine Signals in Three Dimensions

Coppey, Mathieu, Berezhkovskii, Alexander M., Sealfon, Stuart C., Shvartsman, Stanislav Y.

Journal:

Biophysical Journal

Year:

2007

Language:

english

File:

PDF, 181 KB

english, 2007

50

Three-Dimensional Epithelial Morphogenesis in the Developing Drosophila Egg

Osterfield, Miriam, Du, XinXin, Schüpbach, Trudi, Wieschaus, Eric, Shvartsman, Stanislav Y.

Journal:

Developmental Cell

Year:

2013

Language:

english

File:

PDF, 1.90 MB

english, 2013

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